MmuEX6059707 @ mm10
Exon Skipping
Gene
ENSMUSG00000021687 | Scamp1
Description
secretory carrier membrane protein 1 [Source:MGI Symbol;Acc:MGI:1349480]
Coordinates
chr13:94233082-94285829:-
Coord C1 exon
chr13:94285220-94285829
Coord A exon
chr13:94252993-94253070
Coord C2 exon
chr13:94233082-94233180
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTTTCAATTCTTTTTCCAGGAC
3' ss Score
10.94
5' ss Seq
ACGGTAGCA
5' ss Score
3.14
Exon sequences
Seq C1 exon
CTCTCTGGGGTCTGGAATCTTTGGTGTCTGCGGCGGATGTTTTCGCACCTCAGCTACTCGCTCTCCAAGTCTTGTCTCCCCCACCTGCCACGTGGGACCTGCGCGCACCGTCCTCCCCTACACAGGCCACCACCCCTTCCCCAAGCCGCACTAGGTGGGTCCACGGCCCGGGGCTTGGAACCTGCCCTCCGCCTGCGCTCGCCCTTCGGTCGGAGGCAGAGCCCGGAGCGCAGATCCAGGCGGGAAGGGACGGCCGGATGGCTGGGCGCCGCGGGCCTCCGCCGCACCGGGCATGCTCAGTGGCACGGCCGGCTCGGTGGCCCGCGAGCTGCACCCGGATCTGTGCGGCGGCGGCGGCGACGTGAGCGCGCAGGGGGGCGGCGGCCTCGCCTCGTCTGTGTCTCGGCGCCGGGCTCGGGTGGGTGACGCGCAGTGCCGGGGCAATGTCGGATTTTGACAGCAACCCGTTTGCGGATCCGGATCTCAACAACCCGTTCAAG
Seq A exon
GACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATACAACCCTTTCTCCGACTCTCGCACG
Seq C2 exon
CCTCCACCAGGCAGTGTGAAAATGCCTAATGTACCCAACACCCAGCCAGCAATAATGAAGCCAACAGAGGAACATCCAGCTTACACACAGATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021687-'1-11,'1-3,19-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.903
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGCCTCGTCTGTGTCTC
R:
TTATTGCTGGCTGGGTGTTGG
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types