MmuEX6059707 @ mm9
Exon Skipping
Gene
ENSMUSG00000021687 | Scamp1
Description
secretory carrier membrane protein 1 [Source:MGI Symbol;Acc:MGI:1349480]
Coordinates
chr13:95003037-95035101:-
Coord C1 exon
chr13:95034928-95035101
Coord A exon
chr13:95022948-95023025
Coord C2 exon
chr13:95003037-95003135
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTTTCAATTCTTTTTCCAGGAC
3' ss Score
10.94
5' ss Seq
ACGGTAGCA
5' ss Score
3.14
Exon sequences
Seq C1 exon
ACATGCTGTAGCCTGATTTGGGGCTGTGGGGATGTCTCGGGGTGTAGTCTGAAAGATGGGAGCAACATGGTGGGAGCAGTGTTGGCTTTCCTTAGCTGTCTCTCTTTGTCAGATTGTCACAAAGATCTGAACTTCAGGGGATATCAGCATGGGAGAATATGACAGGTTAGAGGT
Seq A exon
GACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATACAACCCTTTCTCCGACTCTCGCACG
Seq C2 exon
CCTCCACCAGGCAGTGTGAAAATGCCTAATGTACCCAACACCCAGCCAGCAATAATGAAGCCAACAGAGGAACATCCAGCTTACACACAGATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021687-'6-4,'6-2,9-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.903
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF049918=LicD=PU(23.0=88.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATGGTGGGAGCAGTGTT
R:
TTATTGCTGGCTGGGTGTTGG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: