GgaEX1051006 @ galGal3
Exon Skipping
Gene
ENSGALG00000004425 | SCAMP3
Description
NA
Coordinates
chrZ:22171912-22192152:-
Coord C1 exon
chrZ:22192069-22192152
Coord A exon
chrZ:22179840-22179917
Coord C2 exon
chrZ:22171912-22172010
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGAATTGTCTTGTCTTCTAGGAT
3' ss Score
9.39
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
CACCACCCGGAGATCGCAGCCCCCGCCATGTCGGACTTCGACAGCAACCCCTTCGCCGACCCGGACCTCAACAACCCCTTCAAG
Seq A exon
GATCCTTCGGTTACGCAAGTGACAAGAAATGTTCCCCCTGGATTAGATGAATACAATCCTTTCTCTGATTCGAGAACA
Seq C2 exon
GCTCCTCCAGGAAATGTGAAAATGCCTAATGTACCCAGTACTCAGCCAGCAATAATGAAACCAACAGAAGAACCACCTGCTTACACTCAAATTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004425-'0-9,'0-4,2-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.970
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCCGGAGATCGCAG
R:
TGAGTGTAAGCAGGTGGTTCT
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]