DreEX0064330 @ danRer10
Exon Skipping
Gene
ENSDARG00000036911 | scamp1
Description
secretory carrier membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1803]
Coordinates
chr21:3586677-3619215:-
Coord C1 exon
chr21:3619061-3619215
Coord A exon
chr21:3589760-3589837
Coord C2 exon
chr21:3586677-3586787
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTGTTTTCTGCAGGAT
3' ss Score
12.23
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
GCCATTTTGCGGTTGCGGATCAGTCTCGAGCTGCTGGTGCGTTTCTTGCCGAAAACCGACAACATAGCCTAACAAAGCAGACAAAATAAACCGGCAAAATGTCAGATTTTGACAGCAATCCCTTCGCGGACCCCGACTTTAGCAACCCGTTTCAG
Seq A exon
GATCCGTCAGTGACACAAGTAACGCGGACTGCCCCGCCTGGCCTGGAGGAGTATAACCCTTTTACAGACACAAAGCCG
Seq C2 exon
GTCCCGCCAGGCTCCGCCCCTAAATCCGTCCCACCCACAACCAACACACAGCCGGCCATCATGAAACCCACTGAAGAACCTCCAGCTTACACTCAGTCTCAGCAGACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036911_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000053596fB5400
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAAAACCGACAACATAGC
R:
TCAGTGGGTTTCATGATGGCC
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]