GgaEX1051006 @ galGal4
Exon Skipping
Gene
ENSGALG00000004425 | SCAMP1
Description
secretory carrier-associated membrane protein 1 [Source:RefSeq peptide;Acc:NP_001264922]
Coordinates
chrZ:22597059-22618186:-
Coord C1 exon
chrZ:22618049-22618186
Coord A exon
chrZ:22604987-22605064
Coord C2 exon
chrZ:22597059-22597157
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGAATTGTCTTGTCTTCTAGGAT
3' ss Score
9.39
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
GGCATCCCGCGAGCCGGCGAGTGTGGGGCGCCGCAGGGCGAGAGCCGCCGCCACCACCACCCGGAGATCGCAGCCCCCGCCATGTCGGACTTCGACAGCAACCCCTTCGCCGACCCGGACCTCAACAACCCCTTCAAG
Seq A exon
GATCCTTCGGTTACGCAAGTGACAAGAAATGTTCCCCCTGGATTAGATGAATACAATCCTTTCTCTGATTCGAGAACA
Seq C2 exon
GCTCCTCCAGGAAATGTGAAAATGCCTAATGTACCCAGTACTCAGCCAGCAATAATGAAACCAACAGAAGAACCACCTGCTTACACTCAAATTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004425_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.970
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACCACCCGGAGAT
R:
GCAGGTGGTTCTTCTGTTGGT
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]