HsaEX0056350 @ hg38
Exon Skipping
Gene
ENSG00000085365 | SCAMP1
Description
secretory carrier membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:10563]
Coordinates
chr5:78360583-78415618:+
Coord C1 exon
chr5:78360583-78360728
Coord A exon
chr5:78388837-78388914
Coord C2 exon
chr5:78415520-78415618
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGAATTTTATTCTAGGAT
3' ss Score
9.79
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
CGGCGACGTGAGCGCGCAGGGGGGCGGCGGCCTCGCCTCGTCTCTCTCTCTGCGCCTGGGTCGGGTGGGTGACGCCGAGAGCCAGAGAGATGTCGGATTTCGACAGTAACCCGTTTGCCGACCCGGATCTCAACAATCCCTTCAAG
Seq A exon
GATCCATCAGTTACACAAGTGACAAGAAATGTTCCACCAGGACTTGATGAATATAATCCATTCTCGGATTCTAGAACA
Seq C2 exon
CCTCCACCAGGCGGTGTGAAGATGCCTAATGTACCCAATACACAACCAGCAATAATGAAACCAACAGAGGAACATCCAGCTTATACACAGATTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085365_MULTIEX1-2/9=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.985 C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCCTCGTCTCTCTCTCTG
R:
TTGCTGGTTGTGTATTGGGTACA
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development