RnoEX0078291 @ rn6
Exon Skipping
Gene
ENSRNOG00000061582 | Scamp1
Description
secretory carrier membrane protein 1 [Source:RGD Symbol;Acc:3625]
Coordinates
chr2:23885042-23941084:-
Coord C1 exon
chr2:23940963-23941084
Coord A exon
chr2:23908933-23909010
Coord C2 exon
chr2:23885042-23885140
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTCAATTCTTTTTCCAGGAC
3' ss Score
11.29
5' ss Seq
ACGGTAACA
5' ss Score
6.72
Exon sequences
Seq C1 exon
CGGCGGCCTCGCCTCGTCTGTGTCTCGGCGCCGGGCTCGGGTGGGTGACGCGCAGTGCCGGGGCAATGTCGGATTTTGACAGCAACCCCTTTGCGGATCCGGATCTCAACAACCCGTTCAAG
Seq A exon
GACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATATAATCCTTTCTCTGATTCTAGAACG
Seq C2 exon
CCTCCACCAGGTGGTGTGAAAATGCCTAATGTACCCAACACCCAGCCAGCAATAATGAAGCCGACCGAGGAGCATCCGGCTTACACACAGATCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061582_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGCCTCGTCTGTGTCTC
R:
TTATTGCTGGCTGGGTGTTGG
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]