BtaEX0033587 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017746 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001178379]
Coordinates
chr20:424989-429264:-
Coord C1 exon
chr20:429121-429264
Coord A exon
chr20:428222-428365
Coord C2 exon
chr20:424989-425152
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGCACCCCTCTCCCTGCAGGAT
3' ss Score
12.4
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AAACTTGAGTAACAACAGAATCAAGGAGGTGAAAGAGGGCGCTTTTGATGGCGCGGCCAGCGTGCAGGAGCTGGTGCTGACGGGGAACCAGCTGGAGACGGCGCACGGGCGCGCGTTCCGCGGCCTCAGCGGCCTCAAGACCTT
Seq A exon
GATGCTGAGAAGTAACCTGATCAGCTGTGTGAGCAATGACACCTTTGCTGGCCTGAGCTCAGTGAGGCTGCTCTCTCTCTACGACAATCGGATCACCACCATCACCCCCGGAGCCTTCACCACGCTTGTCTCTCTGTCTACCAT
Seq C2 exon
AAACCTGCTATCCAACCCCTTCAACTGCAACTGCCACCTTGCCTGGCTCGGGAAGTGGCTGAGGAAGAGACGGATAGTCAGCGGGAACCCCCGGTGCCAGAAGCCCTTCTTCCTCAAAGAGATTCCCATCCAGGACGTGGCCATCCAGGACTTCACCTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017746-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(50.0=63.3),PF138551=LRR_8=PU(8.2=10.2)
A:
PF138551=LRR_8=FE(78.7=100)
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGAAAGAGGGCGCTTTT
R:
ACGTCCTGGATGGGAATCTCT
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development