HsaEX0060161 @ hg38
Exon Skipping
Gene
ENSG00000184347 | SLIT3
Description
slit guidance ligand 3 [Source:HGNC Symbol;Acc:HGNC:11087]
Coordinates
chr5:168749472-168754007:-
Coord C1 exon
chr5:168753864-168754007
Coord A exon
chr5:168752955-168753098
Coord C2 exon
chr5:168749472-168749635
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCCCACCCCTCTCCCTGTAGGAT
3' ss Score
12.36
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AAATCTGAGTAACAATAAGATCAAGGAGGTGCGAGAGGGAGCTTTCGATGGAGCAGCCAGCGTGCAGGAGCTGATGCTGACAGGGAACCAGCTGGAGACCGTGCACGGGCGCGTGTTCCGTGGCCTCAGTGGCCTCAAAACCTT
Seq A exon
GATGCTGAGGAGTAACTTGATCGGCTGTGTGAGTAATGACACCTTTGCCGGCCTGAGTTCGGTGAGACTGCTGTCCCTCTATGACAATCGGATCACCACCATCACCCCTGGGGCCTTCACCACGCTTGTCTCCCTGTCCACCAT
Seq C2 exon
AAACCTCCTGTCCAACCCCTTCAACTGCAACTGCCACCTGGCCTGGCTCGGCAAGTGGTTGAGGAAGAGGCGGATCGTCAGTGGGAACCCTAGGTGCCAGAAGCCATTTTTCCTCAAGGAGATTCCCATCCAGGATGTGGCCATCCAGGACTTCACCTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347-'47-67,'47-66,48-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(50.0=63.3),PF138551=LRR_8=PU(8.2=10.2)
A:
PF138551=LRR_8=FE(78.7=100)
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGGGAGCTTTCGATGGA
R:
GCCACATCCTGGATGGGAATC
Band lengths:
254-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development