MmuEX6084747 @ mm9
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35443225-35446377:+
Coord C1 exon
chr11:35443225-35443368
Coord A exon
chr11:35444345-35444488
Coord C2 exon
chr11:35446214-35446377
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCCCTGCTCTTCCAGGAT
3' ss Score
11.78
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AAACCTGAGCAATAATAGGATCAAGGAAGTGCGGGAGGGTGCCTTCGATGGAGCGGCCGGCGTGCAGGAGCTGATGCTGACGGGGAACCAGCTGGAGACCATGCACGGACGCATGTTCCGGGGCCTCAGTAGCCTCAAGACGCT
Seq A exon
GATGTTGCGGAGCAACCTGATCAGCTGCGTAAGCAACGATACCTTTGCTGGCTTAAGTTCTGTGAGACTGCTGTCTCTCTATGACAACCGAATCACCACCATCACCCCTGGAGCCTTCACCACACTTGTCTCCCTGTCCACCAT
Seq C2 exon
AAACCTCCTGTCTAACCCTTTCAACTGCAACTGCCACATGGCGTGGCTCGGCCGCTGGCTGAGGAAACGCCGCATCGTCAGCGGGAACCCCAGATGCCAGAAGCCCTTTTTCCTCAAGGAGATTCCCATCCAAGACGTGGCCATCCAGGACTTTACCTGCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(50.0=63.3),PF138551=LRR_8=PU(8.2=10.2)
A:
PF138551=LRR_8=FE(78.7=100)
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGATCAAGGAAGTGCGGGA
R:
GAGGAAAAAGGGCTTCTGGCA
Band lengths:
244-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: