GgaEX1053898 @ galGal3
Exon Skipping
Gene
ENSGALG00000001916 | Q90Z43_CHICK
Description
NA
Coordinates
chr13:4332849-4341379:+
Coord C1 exon
chr13:4332849-4332992
Coord A exon
chr13:4336020-4336163
Coord C2 exon
chr13:4341216-4341379
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTTAATCTTTTCAGAAT
3' ss Score
9.33
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
AAATCTGAGCAATAATAAGATCAAGGAGATTCGAGAAGGCACGTTTGATGGAGCTTCGGGAGTGCAGGAGCTGATTCTGACAGAGAATCAACTGGAATCAGTGCACGGACGAATGTTTAGAGGCCTCACGGGGCTGAAGACACT
Seq A exon
AATGCTGAGGAGCAACTCTATCAGCTGCATAAACAATGACACCTTCGCTGGACTGAGCTCAGTGAGGCTTCTTTCTCTGTACGACAATCACATCAGCACCATCACACCTGGAGCCTTCAGCACATTAGTCTCTTTGTCTACAAT
Seq C2 exon
CAATTTGCTGGCTAACTCCTTTAATTGTAACTGTCATTTGGCCTGGCTGGGAAAGTGGTTGAGGAAGAAGAGAATTGTCAGTGGAAATCCACGCTGCTTGAAACCCTTTTTCTTGAAGGATATTCCAATCCAAGATGTAGATGCCCAGGATTTCACCTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(33.3=28.6),PF138551=LRR_8=PU(47.5=59.2)
A:
PF138551=LRR_8=PD(50.8=63.3)
C2:
PF0146319=LRRCT=WD(100=46.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACGTTTGATGGAGCTTC
R:
TCCTGGGCATCTACATCTTGGA
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]