DreEX6057915 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24247032-24256527:-
Coord C1 exon
chr14:24256384-24256527
Coord A exon
chr14:24253415-24253558
Coord C2 exon
chr14:24247032-24247195
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGCCTGTGTGTTTTGGTCAGGAT
3' ss Score
7.33
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AAACTTGAGCAATAATAAACTCCGGGACATCCGTGAGGGTGCGTTTGATGGGGCCGGAGGTGTTTTGGAGCTGCTGTTGACTGGAAACAAGCTGCAGTCGGTCAGCGGACGGATGTTCAAGGGTTTGATCGGCCTCAAAACACT
Seq A exon
GATGCTGAGGAGTAATCAGATCAGCTGTGTGGATAACGCCACCTTCACCGGCTTGAGCTCTGTGCGCCTGCTTTCCCTCTACGATAACCGGATCTCCACTATCGCCCCCGGAGCTTTCAACACCCTGCATTCCCTTTCCACCAT
Seq C2 exon
TAACCTGCTGTCTAATCCCTACGTGTGTGACTGTCACTTAGCCTGGCTGGGGCTGTGGCTTAAGAAGACCAGGGTGGTTAGCGGAAACCCACGCTGTCAGAAACCTGCCTTCCTGAAGGAGATCCCTATTCAAGATGTGGCCATGCCTGATTTCTCCTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268-'22-20,'22-19,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(50.0=63.3),PF138551=LRR_8=PU(8.3=10.2)
A:
PF138551=LRR_8=PD(11.5=14.3),PF127992=LRR_4=PU(65.9=59.2)
C2:
PF127992=LRR_4=PD(31.8=25.0),PF0146319=LRRCT=WD(100=46.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGTTTTGGAGCTGCTGT
R:
ACAGGAGAAATCAGGCATGGC
Band lengths:
248-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]