MmuEX6084747 @ mm10
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35629723-35632875:+
Coord C1 exon
chr11:35629723-35629866
Coord A exon
chr11:35630843-35630986
Coord C2 exon
chr11:35632712-35632875
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCCCTGCTCTTCCAGGAT
3' ss Score
11.78
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AAACCTGAGCAATAATAGGATCAAGGAAGTGCGGGAGGGTGCCTTCGATGGAGCGGCCGGCGTGCAGGAGCTGATGCTGACGGGGAACCAGCTGGAGACCATGCACGGACGCATGTTCCGGGGCCTCAGTAGCCTCAAGACGCT
Seq A exon
GATGTTGCGGAGCAACCTGATCAGCTGCGTAAGCAACGATACCTTTGCTGGCTTAAGTTCTGTGAGACTGCTGTCTCTCTATGACAACCGAATCACCACCATCACCCCTGGAGCCTTCACCACACTTGTCTCCCTGTCCACCAT
Seq C2 exon
AAACCTCCTGTCTAACCCTTTCAACTGCAACTGCCACATGGCGTGGCTCGGCCGCTGGCTGAGGAAACGCCGCATCGTCAGCGGGAACCCCAGATGCCAGAAGCCCTTTTTCCTCAAGGAGATTCCCATCCAAGACGTGGCCATCCAGGACTTTACCTGCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'45-46,'45-44,46-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(50.0=63.3),PF138551=LRR_8=PU(8.2=10.2)
A:
PF138551=LRR_8=FE(78.7=100)
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGATCAAGGAAGTGCGGGA
R:
GAGGAAAAAGGGCTTCTGGCA
Band lengths:
244-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types