RnoEX6046874 @ rn6
Exon Skipping
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20440802-20444057:+
Coord C1 exon
chr10:20440802-20440945
Coord A exon
chr10:20441927-20442070
Coord C2 exon
chr10:20443894-20444057
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCCACGCTCTTCCAGGAT
3' ss Score
11.28
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AAACTTGAGCAATAATAGGATCAAGGAGGTACGGGAGGGTGCGTTTGATGGAGCGGCAGGCGTGCAGGAACTGATGCTGACAGGGAACCAGCTGGAGACCATGCACGGACGCATGTTCCGGGGCCTCAGCGGCCTGAAGACACT
Seq A exon
GATGTTAAGGAGCAACCTGATCAGCTGCGTAAACAATGACACCTTCGCTGGCCTAAGCTCTGTGAGACTGCTGTCCCTCTATGACAATCGGATCACCACCATCAGCCCTGGAGCCTTCACCACGCTCGTCTCCCTGTCCACCAT
Seq C2 exon
AAACCTCTTGTCTAACCCTTTCAACTGCAACTGTCACATGGCCTGGCTCGGCCGGTGGCTGAGGAAACGCCGCATCGTAAGCGGGAACCCCAGATGTCAGAAGCCCTTTTTCCTCAAGGAGATTCCTATCCAAGATGTGGCCATCCAGGACTTCACCTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(50.0=63.3),PF138551=LRR_8=PU(8.2=10.2)
A:
PF138551=LRR_8=FE(78.7=100)
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAAGGAGGTACGGGAGGG
R:
TCTCCTTGAGGAAAAAGGGCT
Band lengths:
248-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]