GgaEX1053898 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3944509-3953039:+
Coord C1 exon
chr13:3944509-3944652
Coord A exon
chr13:3947680-3947823
Coord C2 exon
chr13:3952876-3953039
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTTAATCTTTTCAGAAT
3' ss Score
9.33
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
AAATCTGAGCAATAATAAGATCAAGGAGATTCGAGAAGGCACGTTTGATGGAGCTTCGGGAGTGCAGGAGCTGATTCTGACAGAGAATCAACTGGAATCAGTGCACGGACGAATGTTTAGAGGCCTCACGGGGCTGAAGACACT
Seq A exon
AATGCTGAGGAGCAACTCTATCAGCTGCATAAACAATGACACCTTCGCTGGACTGAGCTCAGTGAGGCTTCTTTCTCTGTACGACAATCACATCAGCACCATCACACCTGGAGCCTTCAGCACATTAGTCTCTTTGTCTACAAT
Seq C2 exon
CAATTTGCTGGCTAACTCCTTTAATTGTAACTGTCATTTGGCCTGGCTGGGAAAGTGGTTGAGGAAGAAGAGAATTGTCAGTGGAAATCCACGCTGCTTGAAACCCTTTTTCTTGAAGGATATTCCAATCCAAGATGTAGATGCCCAGGATTTCACCTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'26-47,'26-46,27-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(33.3=28.6),PF138551=LRR_8=PU(47.5=59.2)
A:
PF138551=LRR_8=PD(50.8=63.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACGTTTGATGGAGCTTC
R:
TCCTGGGCATCTACATCTTGGA
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]