BtaEX0035597 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006654 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:35247178-35257782:-
Coord C1 exon
chr2:35257667-35257782
Coord A exon
chr2:35251481-35252052
Coord C2 exon
chr2:35247178-35248046
Length
572 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTTTTTCCCTGCAGAGA
3' ss Score
12.43
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AAGCTATATAGAGAAGACTTTCCGGGATCTGAAAGAAGAATTTCATAGAATATGCTTGCTAGCTAAAGCACAAAAAGACCACTTAAGCAAACTTAATGTACCATCCGCTGCACCTG
Seq A exon
AGACACAGTGCTCTATGCCTATACAGTGTACGGATAAAACAGATAAACAAGAAGTGCTGTTTAAGCCTCAGGCAAAAGATGATATAAATAGAGGTGCACTGTGCATCACATCTGTCACACCAAGAGGACTGGGCCAAGATGAGGAAGACACATCTTTTGAATCACTTTCTAAACTCAATGTCAAGTTTCCACCTACAGACAATGACTCTACTTTCTTACATAGCACTCCAGAAAGACCCGATGTCCTTGGTTCTGTCACATCTGAGACTGTGTGCCAGGATCAATTTAATATGGAGCCCAGAGACAATCCAGGAAACTTTGTCAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTGACCCCATAGCTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAAACCCTCAAATACTTGTATTAGGACATCTCTGGATAGAGCTCCGTGTTTGCCACCTGGAGACCATAATGCATTATTTGTAAATACATTCCCACTTCAGGACCCATCTGATGCACCTTTTCCTTCACTCGATTCCCCAGGAAAAGCTATCCGAGGACCACAGCAG
Seq C2 exon
CCCATTTGGAAGCCCTTTCCTAATCAAGACAGTGACTTATCGGTACTAAGTGGCACAGGCTCCGAACTGCATATACCTCGCGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTACATCCAGGGGGGATTTCCTCCGGCATCTTAATTCACACTTTAATGGGGAGACTTAAGATGCATTGAAAACAGACATGTCAAGTTCTACGTGATGATTTTGGGTTTGTAATATTATATATTAATACTTGATTGCAAACTTAGCTCAAGATCATTTACTGAAAAATCCAGTCACTGCTATTTGAATTTCTAAACAATATTGTAACTGTCTTTTATTGCCTTTTAAAAGATTGTTTTGTACAAAGCTGTAATTCATTGTATTCATGTTTACAGTGTTTATTATGGGATTATGCAATTGTGTAACAATAATTTATGTTTTTTCAAATGTCTAAGCTTATTGCTTGGGTTTCTAGTTAGAACTATTGAATGTGGTGATGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006654_MULTIEX1-8/9=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.615 C2=0.203
Domain overlap (PFAM):
C1:
PF128452=TBD=FE(68.4=100)
A:
PF128452=TBD=PD(21.1=6.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAAAAAGACCACTTAAGCA
R:
AGCAGTGACTGGATTTTTCAGT
Band lengths:
347-919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development