GgaEX1057157 @ galGal3
Exon Skipping
Gene
ENSGALG00000011131 | TANK
Description
NA
Coordinates
chr7:23040583-23047863:-
Coord C1 exon
chr7:23047745-23047863
Coord A exon
chr7:23045661-23046244
Coord C2 exon
chr7:23040583-23041370
Length
584 bp
Sequences
Splice sites
3' ss Seq
TCCTCATTCTTTCTTTACAGAAA
3' ss Score
11.37
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGAGAATCTGGAGACTATTTTTCAGGAGATGAAAGAAGAGTGTCATCGAATATGTATGCTAGCCAGAGAACAAACAGACCAACTGAGTAAATTTAAAATAAAGCCAGAACCTGAAACTG
Seq A exon
AAATACAGTTTTCCATGCCAATACAGTGTACTGATAAAACTGATGAACAAGCAGAAGAGCTTTTTAAGCCTCGGGTTATACAGGATATAAATAGAGGTGCATCATGCATCACATCTATCACACCAAGAGGAGTGGGCCAAGATGAGGACAACAACTCTGTAGAATCACTTTCTAAATTTAATGTCAAGTTTCCACCTACAGACAATGACTCTGCTTTCTTGCAGAGCACTCAGGAAAAAGTAACAGTTCCTTGCTCTGGTATAGCTGAAAACATGCTTCAAGATCATCATTTTAACCGGGAGCACAGAGACCGTGCTGTTAACCTCAGTAAATTGGAACCTAACTCATTTGAAGCTCATGGAGTTGATCTCGTGACCTCAGCTTTACAAAGCTTAACTACTGTTGACAAAACAAACCCTCCAAATCATGCAAACATGCCCATAGAAAATATCCGTGACAAAACATGCTTGAAAACGGCAGACACTGCTTTCACGTTTATATCTAAGCACGCAAGCCAAGGTGCACCTGAAGTGATTTTTCCGTCTTTAGAAGCTGCTGGAACAACCGTCAGAGGTCCTCATCAG
Seq C2 exon
CTCATTTGGCAGCCTCGGGACAATGATTTGCTGGCACAAACTTATACAGACTCTGAACTGAATCAGCATGGAGTATGTGAATTCTGTCGAGAAGTTTTCCCACCATCTCTAACATCTAAGGAAGATTTTCTTCGGCATCTGAATTCCCACTTTAAAGTACAGTCTTAACATATGAGAATTCAGTGGGTCACTGTTTTTGCATACATTTGGTTTTTTATTATTATTATTAATAGATTTGCTAAGAATTTAAGAATTAAGACTTCTTGTAACAAGAACTAACTGAAATTGTCAGATAAGCACATTTTTTTCATTGTTGTTTGACGAGGTAAAATGCAACTGTAAGTCTGTACTGTAATTCGCATTACTGCTTGTCATGCTTCAATATTGCCATTGGGATTGTGTTTAAAAGCTTATTTTTTTCCCCAGTTAATCTTTGCCTGGATAGGCTCGAAGTCATGATTATATTTGTCAGGACAGATTTGCAGGATTAAGTCTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131-'8-14,'8-12,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.562 C2=0.055
Domain overlap (PFAM):
C1:
PF128452=TBD=FE(71.4=100)
A:
PF128452=TBD=PD(21.4=6.2)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAAGCCAGAACCTGAAACTG
R:
TGCATTTTACCTCGTCAAACAACA
Band lengths:
358-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]