RnoEX0088578 @ rn6
Exon Skipping
Gene
ENSRNOG00000008859 | Tank
Description
TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]
Coordinates
chr3:47505868-47515700:+
Coord C1 exon
chr3:47505868-47505983
Coord A exon
chr3:47511222-47511772
Coord C2 exon
chr3:47514864-47515700
Length
551 bp
Sequences
Splice sites
3' ss Seq
TTTGTATCCGTTTCCTGCAGACA
3' ss Score
9.37
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATATGCTTACTAGCAAAAGCACAGAAAGACCACTTAAGCAAACTTAATATACCAGATATTGCAACTG
Seq A exon
ACACACAGTGTTCTGTGCCTATACAGTGTACCGATAAAACAGAAAAACAAGAAGCGCTGTTTAAGCCCCAGGCTAAAGATGATATAAATAGAGGTATGTCGTGCGTCACATCTGTCACACCAAGAGGACTGGGCCGGGATGAGGAAGATACCTCTTTTGAATCGCTTTCTAAATTCAATGTCAAGTTTCCGCCTGTGGACAGTGACTCTACTTTTCTACATAGCACTCCAGAGACCCCGAGCATCCTTGCTCCCTCCACACCTGAGGCAGTGTGCCAGGACAAGTTTAATGTGGAAGTCAGAGACAGCCCAGGAAACTTGGTTAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTAACCCCATAACTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAAACCCTCAAATCTTAGAGCTCCGTGTTTGCCAGCTGGAGACCATAATGTGTTCTATGTAAATACGTTCCCACTTCAAGACCCGCCTGACGCACCTTTTCCCTCACTGGATTCCCCAGGAAAGGCTGTCCGAGGACCACAGCAG
Seq C2 exon
CCCCTTTGGAAGCCTTTTCCTAACCAAGACACTGACTTAGTGGTACCAAGTGGTTCAGACTCAGTACTCCTTAAACCTCAAGTGTGTGAGTTCTGTCAAGAGCTTTTCCCACCATCCCTTACATCCAGAGGGGATTTCCTCCGGCATCTTAATACACACTTTAATGGAGAGACTTAAATCACATTTGAAAACAGACATATCATGTTCTCTGTGATGGTTTTGAGTTTGTAATGCTAGAGAATGCTTGCTTGTAAGCTAAATTTAAGGTTGTGTATAAAAGAAATTCATTGTCACAGCTATTTGAATTTTTCTCTAAAGTTGTTACTCTATCTTTTAAGAGATCATTTTGTATATAAAAAACTATAATTCATTATATTATATTATTCATGTTTATACTATAATTTCCAGATTTCAAAATTACGCATGTGACCTACAGAGTTATGTAATCATAATTTATGTTCTAAATGGCTAAGTTTATTGTTTGACTCTCACGAAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008859-'19-23,'19-19,22-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.543 C2=0.328
Domain overlap (PFAM):
C1:
PF067856=UPF0242=PD(5.7=20.0),PF128452=TBD=FE(68.4=100)
A:
PF128452=TBD=PD(21.1=6.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGACTTTCTGGGACCT
R:
CAAGCAAGCATTCTCTAGCATT
Band lengths:
358-909
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]