HsaEX0063574 @ hg19
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:11562]
Coordinates
chr2:162081142-162092698:+
Coord C1 exon
chr2:162081142-162081257
Coord A exon
chr2:162087482-162088062
Coord C2 exon
chr2:162091853-162092698
Length
581 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCTTCTCCCTCCAGAAA
3' ss Score
11.5
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGGTAATATAGAGAAGACTTTCTGGGATCTGAAAGAAGAATTTCATAAAATATGCATGCTAGCAAAAGCACAGAAAGACCACTTAAGCAAACTTAATATACCAGACACTGCAACTG
Seq A exon
AAACACAGTGCTCTGTGCCTATACAGTGTACGGATAAAACAGATAAACAAGAAGCGCTGTTTAAGCCTCAGGCTAAAGATGATATAAATAGAGGTGCACCATCCATCACATCTGTCACACCAAGAGGACTGTGCAGAGATGAGGAAGACACCTCTTTTGAATCACTTTCTAAATTCAATGTCAAGTTTCCACCTATGGACAATGACTCAACTTTCTTACATAGCACTCCAGAGAGACCCGGCATCCTTAGTCCTGCCACGTCTGAGGCAGTGTGCCAAGAGAAATTTAATATGGAGTTCAGAGACAACCCAGGGAACTTTGTTAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTGACCCCATAGCTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAAGCCCTCAAATCTCGTAAACACTTGTATCAGGACAACTCTGGATAGAGCTGCGTGTTTGCCACCTGGAGACCATAATGCATTATATGTAAATAGCTTCCCACTTCTGGACCCATCTGATGCACCTTTTCCCTCACTCGATTCCCCGGGAAAAGCAATCCGAGGACCACAGCAG
Seq C2 exon
CCCATTTGGAAGCCCTTTCCTAATCAAGACAGTGACTCGGTGGTACTAAGTGGCACAGACTCAGAACTGCATATACCTCGAGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTACATCCAGGGGGGATTTCCTTCGGCATCTTAATTCACACTTCAATGGAGAGACTTAAGACACATTTGAAAACAGACATATCAAGTTCTATGTGATGATTTTGGGTTTTTAATACTATAAATACTTGATTGTAAACTAAATTCAAGATCATTTATAGGAAAATCTAGTTTCACAGCTATTTGAATTTTTTTCTGGATTTACTATATAACTCTTATTTTTTAAAAGATCATTCTGTTCTTTCAAGGAGAAATAAGCCTAAAAGAAGAAAAACAAAAAAAATTCTGTATAAAACTGTAATCCTTTGTATTCATGTTTACAGTGCTATTACTATAATTCAAAATTATGTATGTGACTTAGAGTTATATAATCATAATTTATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.443 C2=0.203
Domain overlap (PFAM):
C1:
PF128452=TBD=FE(68.4=100)
A:
PF128452=TBD=PD(21.1=6.2)
C2:
PF128452=TBD=PD(11.8=75.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAGCACAGAAAGACCACT
R:
AAATAGCTGTGAAACTAGATTTTCCT
Band lengths:
355-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)