MmuEX6101563 @ mm9
Exon Skipping
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61482364-61492228:+
Coord C1 exon
chr2:61482364-61482479
Coord A exon
chr2:61487795-61488345
Coord C2 exon
chr2:61491436-61492228
Length
551 bp
Sequences
Splice sites
3' ss Seq
TTGTATCTGTTTTCCTGCAGACA
3' ss Score
11.68
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATTTGCTTGCTAGCAAAAGCACAGAAAGATCACTTAAGCAAACTTAATATACCAGATATTGCAACTG
Seq A exon
ACACACAGTGTTCTGTGCCTATACAGTGTACTGATAAAACAGAGAAACAAGAAGCGCTGTTTAAGCCCCAGGCTAAAGATGATATAAATAGAGGTATGTCGTGCGTCACAGCTGTCACACCAAGAGGACTGGGCCGGGATGAGGAAGATACCTCTTTTGAATCACTTTCTAAATTCAATGTCAAGTTTCCGCCTATGGACAATGACTCTATTTTTCTACATAGCACTCCAGAGGCCCCGAGCATCCTTGCTCCTGCCACACCTGAGACAGTGTGCCAGGACCGATTTAATATGGAAGTCAGAGACAACCCAGGAAACTTTGTTAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTGACCCCATAACTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAACCCCTCAAATCTTAGAGCGACGTGTTTGCCAGCTGGAGACCACAATGTGTTCTATGTAAATACGTTCCCACTTCAAGACCCGCCTGACGCACCTTTTCCCTCACTGGATTCCCCAGGAAAGGCTGTCCGAGGACCACAGCAG
Seq C2 exon
CCCTTTTGGAAGCCTTTTCTTAACCAAGACACTGACTTAGTGGTACCAAGTGATTCAGACTCAGAGCTCCTTAAACCTCTAGTGTGTGAATTCTGTCAAGAGCTTTTCCCACCATCCATTACATCCAGAGGGGATTTCCTCCGGCATCTTAATACACACTTTAATGGGGAGACTTAAATCACGTTTGAAAACAGACATATCATGTTCTCTGTGGTGGTTTTGGATTTGTAACGCTAGAGAACGCTTTCTCGTGAGCCAAATGTAAGATTGATTATAAAGTTGTTACTTTATCTTTTAAGAGATCATTTTGTATAGAACTATAACTCATTATATTATTCATGTTTATACCTATAATTTCTACATTTCAAAATTACACATGTGACTTACAGAGTTATTCAGTCATAATTTATGTTTCAAATAGCTAAGTTTATTGTTTGACTATTGTGAGATCTATTAAATTTAGTAATAGCAAATGTTTATAGGATATTCAAATTTCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289-'16-22,'16-19,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.522 C2=0.052
Domain overlap (PFAM):
C1:
PF128452=TBD=FE(68.4=100)
A:
PF128452=TBD=PD(21.1=6.5)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGACTTTCTGGGACCT
R:
AGCGTTACAAATCCAAAACCACC
Band lengths:
342-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: