GgaEX1057157 @ galGal4
Exon Skipping
Gene
ENSGALG00000011131 | TANK
Description
TRAF family member-associated NF-kappa-B activator [Source:RefSeq peptide;Acc:NP_001264800]
Coordinates
chr7:20950028-20960066:-
Coord C1 exon
chr7:20959948-20960066
Coord A exon
chr7:20957864-20958447
Coord C2 exon
chr7:20950028-20953573
Length
584 bp
Sequences
Splice sites
3' ss Seq
TCCTCATTCTTTCTTTACAGAAA
3' ss Score
11.37
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGAGAATCTGGAGACTATTTTTCAGGAGATGAAAGAAGAGTGTCATCGAATATGTATGCTAGCCAGAGAACAAACAGACCAACTGAGTAAATTTAAAATAAAGCCAGAACCTGAAACTG
Seq A exon
AAATACAGTTTTCCATGCCAATACAGTGTACTGATAAAACTGATGAACAAGCAGAAGAGCTTTTTAAGCCTCGGGTTATACAGGATATAAATAGAGGTGCATCATGCATCACATCTATCACACCAAGAGGAGTGGGCCAAGATGAGGACAACAACTCTGTAGAATCACTTTCTAAATTTAATGTCAAGTTTCCACCTACAGACAATGACTCTGCTTTCTTGCAGAGCACTCAGGAAAAAGTAACAGTTCCTTGCTCTGGTATAGCTGAAAACATGCTTCAAGATCATCATTTTAACCGGGAGCACAGAGACCGTGCTGTTAACCTCAGTAAATTGGAACCTAACTCATTTGAAGCTCATGGAGTTGATCTCGTGACCTCAGCTTTACAAAGCTTAACTACTGTTGACAAAACAAACCCTCCAAATCATGCAAACATGCCCATAGAAAATATCCGTGACAAAACATGCTTGAAAACGGCAGACACTGCTTTCACGTTTATATCTAAGCACGCAAGCCAAGGTGCACCTGAAGTGATTTTTCCGTCTTTAGAAGCTGCTGGAACAACCGTCAGAGGTCCTCATCAG
Seq C2 exon
CTCATTTGGCAGCCTCGGGACAATGATTTGCTGGCACAAACTTATACAGACTCTGAACTGAATCAGCATGGAGTATGTGAATTCTGTCGAGAAGTTTTCCCACCATCTCTAACATCTAAGGAAGATTTTCTTCGGCATCTGAATTCCCACTTTAAAGTACAGTCTTAACATATGAGAATTCAGTGGGTCACTGTTTTTGCATACATTTGGTTTTTTATTATTATTATTAATAGATTTGCTAAGAATTTAAGAATTAAGACTTCTTGTAACAAGAACTAACTGAAATTGTCAGATAAGCACATTTTTTTCATTGTTGTTTGACGAGGTAAAATGCAACTGTAAGTCTGTACTGTAATTCGCATTACTGCTTGTCATGCTTCAATATTGCCATTGGGATTGTGTTTAAAAGCTTATTTTTTTCCCCAGTTAATCTTTGCCTGGATAGGCTCGAAGTCATGATTATATTTGTCAGGACAGATTTGCAGGATTAAGTCTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131_MULTIEX1-6/6=5-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.564 C2=0.055
Domain overlap (PFAM):
C1:
PF128452=TBD=FE(71.4=100)
A:
PF128452=TBD=PD(21.4=6.2)
C2:
NO
Main Skipping Isoform:
ENSGALT00000033125fB1956
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAAGCCAGAACCTGAAACTG
R:
TGCATTTTACCTCGTCAAACAACA
Band lengths:
358-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]