MmuEX6101563 @ mm10
Exon Skipping
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61644307-61654171:+
Coord C1 exon
chr2:61644307-61644422
Coord A exon
chr2:61649738-61650288
Coord C2 exon
chr2:61653379-61654171
Length
551 bp
Sequences
Splice sites
3' ss Seq
TTGTATCTGTTTTCCTGCAGACA
3' ss Score
11.68
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATTTGCTTGCTAGCAAAAGCACAGAAAGATCACTTAAGCAAACTTAATATACCAGATATTGCAACTG
Seq A exon
ACACACAGTGTTCTGTGCCTATACAGTGTACTGATAAAACAGAGAAACAAGAAGCGCTGTTTAAGCCCCAGGCTAAAGATGATATAAATAGAGGTATGTCGTGCGTCACAGCTGTCACACCAAGAGGACTGGGCCGGGATGAGGAAGATACCTCTTTTGAATCACTTTCTAAATTCAATGTCAAGTTTCCGCCTATGGACAATGACTCTATTTTTCTACATAGCACTCCAGAGGCCCCGAGCATCCTTGCTCCTGCCACACCTGAGACAGTGTGCCAGGACCGATTTAATATGGAAGTCAGAGACAACCCAGGAAACTTTGTTAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTGACCCCATAACTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAACCCCTCAAATCTTAGAGCGACGTGTTTGCCAGCTGGAGACCACAATGTGTTCTATGTAAATACGTTCCCACTTCAAGACCCGCCTGACGCACCTTTTCCCTCACTGGATTCCCCAGGAAAGGCTGTCCGAGGACCACAGCAG
Seq C2 exon
CCCTTTTGGAAGCCTTTTCTTAACCAAGACACTGACTTAGTGGTACCAAGTGATTCAGACTCAGAGCTCCTTAAACCTCTAGTGTGTGAATTCTGTCAAGAGCTTTTCCCACCATCCATTACATCCAGAGGGGATTTCCTCCGGCATCTTAATACACACTTTAATGGGGAGACTTAAATCACGTTTGAAAACAGACATATCATGTTCTCTGTGGTGGTTTTGGATTTGTAACGCTAGAGAACGCTTTCTCGTGAGCCAAATGTAAGATTGATTATAAAGTTGTTACTTTATCTTTTAAGAGATCATTTTGTATAGAACTATAACTCATTATATTATTCATGTTTATACCTATAATTTCTACATTTCAAAATTACACATGTGACTTACAGAGTTATTCAGTCATAATTTATGTTTCAAATAGCTAAGTTTATTGTTTGACTATTGTGAGATCTATTAAATTTAGTAATAGCAAATGTTTATAGGATATTCAAATTTCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289-'27-37,'27-30,33-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.523 C2=0.052
Domain overlap (PFAM):
C1:
PF128452=TBD=FE(68.4=100)
A:
PF128452=TBD=PD(21.1=6.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGACTTTCTGGGACCT
R:
AGCGTTACAAATCCAAAACCACC
Band lengths:
342-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types