HsaEX0063574 @ hg38
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:161224631-161236187:+
Coord C1 exon
chr2:161224631-161224746
Coord A exon
chr2:161230971-161231551
Coord C2 exon
chr2:161235342-161236187
Length
581 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCTTCTCCCTCCAGAAA
3' ss Score
11.5
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGGTAATATAGAGAAGACTTTCTGGGATCTGAAAGAAGAATTTCATAAAATATGCATGCTAGCAAAAGCACAGAAAGACCACTTAAGCAAACTTAATATACCAGACACTGCAACTG
Seq A exon
AAACACAGTGCTCTGTGCCTATACAGTGTACGGATAAAACAGATAAACAAGAAGCGCTGTTTAAGCCTCAGGCTAAAGATGATATAAATAGAGGTGCACCATCCATCACATCTGTCACACCAAGAGGACTGTGCAGAGATGAGGAAGACACCTCTTTTGAATCACTTTCTAAATTCAATGTCAAGTTTCCACCTATGGACAATGACTCAACTTTCTTACATAGCACTCCAGAGAGACCCGGCATCCTTAGTCCTGCCACGTCTGAGGCAGTGTGCCAAGAGAAATTTAATATGGAGTTCAGAGACAACCCAGGGAACTTTGTTAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTGACCCCATAGCTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAAGCCCTCAAATCTCGTAAACACTTGTATCAGGACAACTCTGGATAGAGCTGCGTGTTTGCCACCTGGAGACCATAATGCATTATATGTAAATAGCTTCCCACTTCTGGACCCATCTGATGCACCTTTTCCCTCACTCGATTCCCCGGGAAAAGCAATCCGAGGACCACAGCAG
Seq C2 exon
CCCATTTGGAAGCCCTTTCCTAATCAAGACAGTGACTCGGTGGTACTAAGTGGCACAGACTCAGAACTGCATATACCTCGAGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTACATCCAGGGGGGATTTCCTTCGGCATCTTAATTCACACTTCAATGGAGAGACTTAAGACACATTTGAAAACAGACATATCAAGTTCTATGTGATGATTTTGGGTTTTTAATACTATAAATACTTGATTGTAAACTAAATTCAAGATCATTTATAGGAAAATCTAGTTTCACAGCTATTTGAATTTTTTTCTGGATTTACTATATAACTCTTATTTTTTAAAAGATCATTCTGTTCTTTCAAGGAGAAATAAGCCTAAAAGAAGAAAAACAAAAAAAATTCTGTATAAAACTGTAATCCTTTGTATTCATGTTTACAGTGCTATTACTATAATTCAAAATTATGTATGTGACTTAGAGTTATATAATCATAATTTATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560-'55-46,'55-41,61-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=0.420 C2=0.185
Domain overlap (PFAM):
C1:
PF128452=TBD=FE(68.4=100)
A:
PF128452=TBD=PD(21.1=6.2)
C2:
PF128452=TBD=PD(11.8=75.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAGCACAGAAAGACCACT
R:
AAATAGCTGTGAAACTAGATTTTCCT
Band lengths:
355-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development