BtaEX0039152 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010241 | UNC5D
Description
Bos taurus unc-5 homolog D (C. elegans) (UNC5D), mRNA. [Source:RefSeq mRNA;Acc:NM_001192518]
Coordinates
chr27:30948639-30952004:+
Coord C1 exon
chr27:30948639-30948819
Coord A exon
chr27:30949689-30949856
Coord C2 exon
chr27:30951840-30952004
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCCCCATTTTTCTCTCTCAGTGA
3' ss Score
10.39
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTGGAATGGCTGAAAAACGAGGAGCCCATAGACTCTGAACAAGATGAGCACATTGACACCAGGGCGGACCACAACCTCATCATCCGGCAGGCGCGGCTCTCTGACTCCGGGAATTACACTTGCATGGCGGCCAACATCGTAGCCAAGAGGAGGAGCCTGTCGGCTACAGTGGTGGTTTATG
Seq A exon
TGAATGGTGGCTGGTCTTCCTGGACAGAGTGGTCAGCCTGCAATGTTCCCTGTGGGAGAGGATGGCAGAAACGTTCCCGGACCTGCACCAACCCAGCTCCTCTCAATGGTGGAGCCTTTTGTGAGGGAATGTCAGTGCAGAAAATAACCTGCACTGCTCTCTGTCCTG
Seq C2 exon
TGGACGGGAGCTGGGAAGTGTGGAGTGAGTGGTCGGTCTGCAGCCCAGAGTGCGAGCATTTGCGGATCCGAGAATGCACAGCCCCTGCCCCGAGAAACGGGGGCAAATTCTGCGAAGGTCTAAGCCAGGAATCTGAGAACTGCACAGACGGCCTTTGCATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010241_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=PU(96.2=89.5)
C2:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAAAACGAGGAGCCCAT
R:
TTCTCGGATCCGCAAATGCTC
Band lengths:
247-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development