HsaEX0069397 @ hg19
Exon Skipping
Gene
ENSG00000156687 | UNC5D
Description
unc-5 homolog D (C. elegans) [Source:HGNC Symbol;Acc:18634]
Coordinates
chr8:35541065-35544227:+
Coord C1 exon
chr8:35541065-35541245
Coord A exon
chr8:35542100-35542267
Coord C2 exon
chr8:35544063-35544227
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCCCCATTTTTCTCTCTCAGTGA
3' ss Score
10.39
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTGGAATGGCTGAAAAATGAAGAGCCCATTGACTCTGAACAAGACGAGAACATTGACACCAGGGCTGACCATAACCTGATCATCAGGCAGGCACGGCTCTCGGACTCAGGAAATTACACCTGCATGGCAGCCAACATCGTGGCTAAGAGGAGAAGCCTGTCGGCCACTGTTGTGGTCTACG
Seq A exon
TGAATGGAGGCTGGTCTTCCTGGACAGAGTGGTCAGCCTGCAATGTTCGCTGTGGTAGAGGATGGCAGAAACGTTCCCGGACCTGCACCAACCCAGCTCCTCTCAATGGTGGGGCCTTTTGTGAGGGAATGTCAGTGCAGAAAATAACCTGCACTTCTCTTTGTCCTG
Seq C2 exon
TGGATGGGAGCTGGGAAGTGTGGAGCGAATGGTCCGTCTGCAGTCCAGAGTGTGAACATTTGCGGATCCGGGAGTGCACAGCACCACCCCCGAGAAATGGGGGCAAATTCTGTGAAGGTCTAAGCCAGGAATCTGAAAACTGCACAGATGGTCTTTGCATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156687_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=PU(96.2=89.5)
C2:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACCAGGGCTGACCATAA
R:
ACCTTCACAGAATTTGCCCCC
Band lengths:
247-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)