RnoEX0096648 @ rn6
Exon Skipping
Gene
ENSRNOG00000011858 | Unc5d
Description
unc-5 netrin receptor D [Source:RGD Symbol;Acc:1309245]
Coordinates
chr16:67484313-67487268:+
Coord C1 exon
chr16:67484313-67484493
Coord A exon
chr16:67485314-67485481
Coord C2 exon
chr16:67487104-67487268
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCCCCATTTTTGTCTCTCAGTGA
3' ss Score
9.44
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTGGAATGGCTGAAAAATGAAGAGCCCATTGACTCTGAACAGGATGAGAACATTGACACCAGGGCTGACCATAACCTGATCATCAGGCAGGCCCGGCTCTCAGACTCGGGGAATTACACCTGTATGGCAGCCAACATCGTGGCCAAGAGGAGGAGCCTGTCAGCAACTGTGGTGGTCTACG
Seq A exon
TGAATGGAGGCTGGTCTTCCTGGACAGAGTGGTCAGCCTGCAATGTTCGCTGTGGTAGAGGATGGCAGAAACGTTCCCGGACCTGCACCAACCCCGCTCCTCTCAATGGTGGGGCCTTTTGTGAGGGAATGTCAGTGCAGAAAATAACCTGCACTGCTCTTTGTCCTG
Seq C2 exon
TGGACGGCAGCTGGGAAGTATGGAGTGAATGGTCAGTCTGCAGCCCAGAGTGTGAACATCTTCGCATCCGTGAGTGCACAGCTCCACCCCCAAGAAACGGGGGCAAGTTCTGTGAAGGGCTCAGCCAGGAATCTGAAAACTGCACGGATGGTCTCTGCATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011858_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=PU(96.2=89.5)
C2:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTGACACCAGGGCTGAC
R:
AGAACTTGCCCCCGTTTCTTG
Band lengths:
244-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]