MmuEX0050642 @ mm9
Exon Skipping
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 homolog D (C. elegans) [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:29869430-29872351:-
Coord C1 exon
chr8:29872171-29872351
Coord A exon
chr8:29871197-29871364
Coord C2 exon
chr8:29869430-29869594
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCCCCATTTTTGTCTCTCAGTGA
3' ss Score
9.44
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTGGAATGGCTGAAAAATGAGGAGCCCATCGACTCCGAACAGGATGAGAACATTGACACCAGGGCTGACCATAACTTGATCATCAGACAGGCCCGGCTGTCAGACTCAGGGAATTACACCTGTATGGCAGCCAACATCGTGGCCAAGAGGAGGAGCCTCTCAGCAACTGTGGTGGTCTACG
Seq A exon
TGAATGGAGGCTGGTCTTCCTGGACAGAGTGGTCAGCCTGCAATGTTCGCTGTGGTAGAGGATGGCAGAAACGTTCCCGGACCTGCACCAACCCCGCTCCTCTCAATGGTGGGGCCTTTTGTGAGGGAATGTCAGTGCAGAAAATAACCTGCACTGCTCTTTGTCCTG
Seq C2 exon
TGGATGGCAGCTGGGAAGTGTGGAGTGAATGGTCAGTCTGCAGCCCAGAGTGTGAACATCTTCGTATCCGTGAGTGCACAGCTCCACCCCCAAGAAATGGGGGCAAGTTCTGTGAAGGTCTCAGCCAGGAATCTGAAAACTGCACAGATGGTCTCTGCATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.295 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=PU(96.2=89.5)
C2:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGGGCTGACCATAACT
R:
TTCCTGGCTGAGACCTTCACA
Band lengths:
257-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types