DreEX0083411 @ danRer10
Exon Skipping
Gene
ENSDARG00000061541 | unc5db
Description
unc-5 homolog Db (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-060531-162]
Coordinates
chr5:26730023-26739492:+
Coord C1 exon
chr5:26730023-26730203
Coord A exon
chr5:26735337-26735504
Coord C2 exon
chr5:26739328-26739492
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGATCTCTCTGTCTCTGCAGTGA
3' ss Score
9.79
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTGGAGTGGTTGAAAAATGAAGAACTGGTCAGCGCACTTGAAGATGACAACATTGACACTCGTGCTGACCACAATCTGATCATCAATGAAGCCAGACTTTCCGACTCTGCCAACTACACCTGCCTCGCCACTAACATCGTCGCAAAAAGACGCAGTACTACAGCTACTGTAGTTGTGTTTG
Seq A exon
TGAACGGCGGTTGGTCTCTGTGGACTGAGTGGTCTTCCTGCAGTGTGAACTGTGGGAGAGGAGTTCAGAAACGCTCTCGGACCTGCACGAACCCTGCTCCTCTGAACGGAGGGGCTTTCTGCGAGGGCATGTCTGTCCAGAAGATCGCCTGCAATGCAGTCTGTCCAG
Seq C2 exon
TGGATGGAGTTTGGGAGGAGTGGAGCGAGTGGACGATGTGTAGTGCGCAGTGTGAGAGACAGCGATGGAGGGAGTGCAACGATCCTCCACCCCGTCACAGAGGCAAGATGTGTGAGGGAGAAGGTCAAAGCACAGAGAACTGCACTGGAGGATTGTGCACGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061541-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=87.7)
C2:
PF0009014=TSP_1=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCGTGCTGACCACAATC
R:
TCCCTCACACATCTTGCCTCT
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]