GgaEX6024649 @ galGal4
Exon Skipping
Gene
ENSGALG00000001608 | UNC5D
Description
unc-5 netrin receptor D [Source:HGNC Symbol;Acc:HGNC:18634]
Coordinates
chr22:1879792-1881582:+
Coord C1 exon
chr22:1879792-1879972
Coord A exon
chr22:1880295-1880462
Coord C2 exon
chr22:1881418-1881582
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGCACGGTTCTGTGTTGCAGTGA
3' ss Score
7.43
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTGGAATGGCTGAAGAATGAGGAGCCCATAGATTCCAACCTGGATGAGAACATTGACACCAGGGCAGACCACAACCTGATCATCCGGCAGGCGCGTCTGTCCGACTCAGGGAACTACACCTGTATGGCTGCCAATATTGTTGCCAAGAGGAGGAGCATGTCTGCAACTGTCGTGGTTTATG
Seq A exon
TGAATGGAGGTTGGTCGTCATGGACTGAGTGGTCCAACTGCAACGCGCGCTGCGGTCGGGGCTGGCAGAAGCGATCGCGGACCTGCACCAACCCTGCCCCGCTCAACGGAGGGGCGTTCTGCGAGGGGATGTCCGTGCAGAAGATCACCTGCACTTCTCTTTGCCCTG
Seq C2 exon
TGGATGGAAACTGGGAGGTGTGGAGTGAATGGTCTGTGTGCAGCCCGGAGTGCGAGCATTTGAGGGTTCGGGAATGTATTGCACCAGCGCCACGAAACGGAGGGAAGTACTGCGAGGGCCTGAGCCAGGAGTCAGAGAACTGCACTGAGGGGCTTTGCATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=PU(96.2=89.5)
C2:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTGACACCAGGGCAGAC
R:
GCAGTACTTCCCTCCGTTTCG
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]