BtaEX0039309 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020311 | USP20
Description
Bos taurus ubiquitin specific peptidase 20 (USP20), mRNA. [Source:RefSeq mRNA;Acc:NM_001105333]
Coordinates
chr11:100259017-100261405:+
Coord C1 exon
chr11:100259017-100259086
Coord A exon
chr11:100260162-100260275
Coord C2 exon
chr11:100261327-100261405
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGCCCCCTCCCCCAGCCC
3' ss Score
9.97
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCCTCACGGGCATGAAGAACCTCGGCAACTCCTGCTACATGAATGCGGCCTTGCAGGCTCTGTCCAACTG
Seq A exon
CCCCCCGCTCACCCAGTTCTTCTTGGAGTGTGGAGGCCTGGTCCGCACAGACAAGAAGCCAGCCCTGTGCAAAAGTTATCAGAAGCTGGTCTCTGAGGTCTGGCACAGGAAACG
Seq C2 exon
CCCCAGCTATGTGGTTCCCACCAGCCTGTCCCATGGGATCAAGTTGGTCAACCCAATGTTCCGAGGCTATGCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020311_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0044324=UCH=PU(4.1=91.7)
A:
PF0044324=UCH=FE(7.1=100)
C2:
PF0044324=UCH=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGGGCATGAAGAACCTC
R:
GCATAGCCTCGGAACATTGGG
Band lengths:
140-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development