DreEX0083724 @ danRer10
Exon Skipping
Gene
ENSDARG00000027501 | usp20
Description
ubiquitin specific peptidase 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1219]
Coordinates
chr5:32704147-32707670:+
Coord C1 exon
chr5:32704147-32704216
Coord A exon
chr5:32704340-32704453
Coord C2 exon
chr5:32707238-32707670
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTTATATTCATTTCCCAGTCC
3' ss Score
7.71
5' ss Seq
ACGGTAACA
5' ss Score
6.72
Exon sequences
Seq C1 exon
GTCTGACAGGGATGAAAAACATTGGAAACTCTTGTTATATGAATGCTGCACTGCAGGCCTTGTCCAACTG
Seq A exon
TCCTCCTTTGACTCAGTTTTTCCAGGATTGCAGTGGATTGGTGCGTACGGATAAGAAGCCGGCATTGTGTAAAAGCTATCAGAAGCTTATCTCTGAACTCTGGCACAAGAAACG
Seq C2 exon
GACACTCAGGAGTTTTTGCGATGTCTGATGGACCAGCTTCACGAGGAGCTGAAGGAGCCTTTGTTTGACTGCAGCGGTGGCATCTCTGAAGTCGAGCCTGACCTCAGTCTGGACAGCTGTAATCTTGTGGACGGAGACCGAAGCCCCTCTGAAGACGAATTCCTGTCGTGTGACTCTGGATCAGGAAGCGAAAGGGGAGATGGAGAGCGTGCAGGAGGAGAAGCAGAGCTCCTCATTCAAGATGAATGTGTGGCAGTGAGAGGAACCGGAGGCATCTCGGAGAAAGAGAGGCTGAAGGAGAGAAGAGGAGAAGAGAGGACACGTGAAATGGATGAGGATGCAGATGTGGACACAGCTGCACAAGACGGACAGGCTGAGAGAGAAACTGAAACAGCGACACCAGCCACAGCTGTGCCGGCACCAGGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027501_MULTIEX1-5/22=4-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.593
Domain overlap (PFAM):
C1:
PF0044324=UCH=PU(16.4=91.7)
A:
PF0044324=UCH=FE(28.4=100)
C2:
PF0044324=UCH=PD(34.3=46.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGCCTTGTCCAACTG
R:
GGAGCTCTGCTTCTCCTCCTG
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]