Special

GgaEX0027598 @ galGal3

Exon Skipping

Gene
ENSGALG00000004142 | F1P4F0_CHICK
Description
NA
Coordinates
chr17:6270094-6272324:+
Coord C1 exon
chr17:6270094-6270190
Coord A exon
chr17:6271020-6271133
Coord C2 exon
chr17:6272246-6272324
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTGTTCTCTTGTAGCCC
3' ss Score
10.67
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GATTCTCCATTGCCTGCTCACCCTTTGAAAGCTGTTCCAATTGCAGTGGCTGATGAAGGCGAATCCGAATCAGAGGACGATGACTTGAAACCAAGAG
Seq A exon
CCCACCTCTCACACAGTTTTTTCTGGAATGTGGTGGTCTGGTCCGTACAGATAAGAAACCAGCACTATGCAAAAGTTACCAGAAGCTGGTGTCTGAGGTTTGGCATAAGAAACG
Seq C2 exon
GCCAAGTTATGTTGTTCCAAGCAGTCTGTCCCATGGAATTAAACTCGTCAACCCCATGTTCCGAGGCTATGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.566 A=0.000 C2=0.019
Domain overlap (PFAM):

C1:
NO
A:
PF0044324=UCH=FE(55.9=100)
C2:
PF0044324=UCH=FE(4.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCATTGCCTGCTCACC
R:
TGTGCATAGCCTCGGAACATG
Band lengths:
171-285
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]