RnoEX0097086 @ rn6
Exon Skipping
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9837598-9840694:+
Coord C1 exon
chr3:9837598-9837667
Coord A exon
chr3:9839238-9839351
Coord C2 exon
chr3:9840616-9840694
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCATCCCCAACCTAGCCC
3' ss Score
4.83
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCCTCACAGGCATGAAGAACCTGGGGAACTCCTGTTACATGAATGCTGCCCTGCAGGCCTTGTCCAATTG
Seq A exon
CCCCCCACTCACCCAGTTCTTCCTGGAGTGTGGTGGCCTGGTGCGAACAGACAAGAAGCCAGCCTTGTGCAAAAGTTACCAGAAGTTGATCTCTGAGGTCTGGCACAAGAAACG
Seq C2 exon
GCCAAGCTATGTGGTCCCCACCAGCCTATCCCATGGGATCAAGTTGGTCAACCCGATGTTCCGAGGCTATGCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710-'18-16,'18-15,20-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=PU(82.6=95.0)
A:
PF0044324=UCH=FE(7.0=100)
C2:
PF0044324=UCH=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCATGAAGAACCTGGG
R:
GCATAGCCTCGGAACATCGG
Band lengths:
138-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]