MmuEX0050858 @ mm9
Exon Skipping
Gene
ENSMUSG00000026854 | Usp20
Description
ubiquitin specific peptidase 20 [Source:MGI Symbol;Acc:MGI:1921520]
Coordinates
chr2:30860452-30863377:+
Coord C1 exon
chr2:30860452-30860521
Coord A exon
chr2:30861904-30862017
Coord C2 exon
chr2:30863299-30863377
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTTTCCACCTCCAACCCAGCCC
3' ss Score
3.18
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GCCTCACAGGCATGAAGAACCTGGGAAACTCCTGTTACATGAATGCTGCCCTGCAGGCCTTGTCCAATTG
Seq A exon
CCCCCCGCTCACCCAGTTCTTCCTGGAGTGTGGTGGTCTGGTGCGCACAGACAAGAAGCCAGCCTTGTGCAAAAGTTACCAGAAGTTGATCTCTGAGGTGTGGCACAAGAAGCG
Seq C2 exon
GCCAAGCTATGTGGTCCCCACCAGCCTGTCCCATGGGATCAAGTTGGTCAACCCGATGTTCCGAGGCTATGCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026854-'14-16,'14-14,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0044324=UCH=PU(32.8=91.7)
A:
PF0044324=UCH=FE(56.7=100)
C2:
PF0044324=UCH=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCATGAAGAACCTGGG
R:
GCATAGCCTCGGAACATCGG
Band lengths:
138-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: