Special

GgaEX0027598 @ galGal4

Exon Skipping

Gene
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr17:5714378-5716325:+
Coord C1 exon
chr17:5714378-5714447
Coord A exon
chr17:5715021-5715134
Coord C2 exon
chr17:5716247-5716325
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTGTTCTCTTGTAGCCC
3' ss Score
10.67
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCCTTACTGGAATGAAAAATCTTGGGAACTCCTGCTACATGAATGCAGCACTTCAGGCTCTCTCTAACTG
Seq A exon
CCCACCTCTCACACAGTTTTTTCTGGAATGTGGTGGTCTGGTCCGTACAGATAAGAAACCAGCACTATGCAAAAGTTACCAGAAGCTGGTGTCTGAGGTTTGGCATAAGAAACG
Seq C2 exon
GCCAAGTTATGTTGTTCCAAGCAGTCTGTCCCATGGAATTAAACTCGTCAACCCCATGTTCCGAGGCTATGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142-'15-11,'15-8,16-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.042 A=0.000 C2=0.019
Domain overlap (PFAM):

C1:
PF0044324=UCH=PU(24.7=91.7)
A:
PF0044324=UCH=FE(42.7=100)
C2:
PF0044324=UCH=FE(29.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTACTGGAATGAAAAATCTTGGG
R:
CTGTGCATAGCCTCGGAACAT
Band lengths:
146-260
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]