BtaEX6003869 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017060 | ITGB2
Description
Bos taurus integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) (ITGB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175781]
Coordinates
chr1:145115999-145121462:-
Coord C1 exon
chr1:145121402-145121462
Coord A exon
chr1:145120977-145121065
Coord C2 exon
chr1:145115999-145116179
Length
89 bp
Sequences
Splice sites
3' ss Seq
AGCCCGTGTCTCTCTCCCAGTCC
3' ss Score
8.55
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GACATGCTGCGCCAGCGCCCCCAGCTGCTGCTCCTAGCGGGCCTGCTTGCCCTCCAGTCCG
Seq A exon
TCCTGTCCCAGGAGTGCACCAACTACAAGGTCAGCACCTGCCGGGACTGCATCGAGTCGGGCCCCGGCTGCGCCTGGTGCCAGAAACTG
Seq C2 exon
AACTTCACAGGGCAAGGGGAGCCCGACTCCATTCGCTGTGACACACGAGCGGAGCTGCTGTCAAAGGGCTGCCCAGCTGATGACATCATGGAACCCAAGAGCCTCGCTGAGACCCGGGACAGCCAGGCGGGCAGTCGGAAGCAGCTGTCCCCACAGGAAGTGACGCTCTACCTGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017060-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.1=56.7)
C2:
PF0036213=Integrin_beta=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTTGCCCTCCAGTCC
R:
TCACTTCCTGTGGGGACAGC
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]