GgaEX1030764 @ galGal3
Exon Skipping
Gene
ENSGALG00000007511 | F1NM67_CHICK
Description
NA
Coordinates
chr7:7149293-7150097:-
Coord C1 exon
chr7:7150031-7150097
Coord A exon
chr7:7149722-7149810
Coord C2 exon
chr7:7149293-7149476
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCATCTTCTCCACATTTCAGCCT
3' ss Score
6.71
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GAAATGCCCCGTGACTGCTGCCTCTGGCTGCCAGCAATGACCTGGGTGCTGTTGCTACTGACAACAG
Seq A exon
CCTTTGCTGCAGAGTGTCCCAAGATCAAGGTGGGGACATGCAAGAACTGCATCCAGTCAGGCCCTGGCTGCGCCTGGTGCAAGAAGCTG
Seq C2 exon
AGTTTCACCAAAGCTGGTGAGCCAGACTCCAACCGCTGTGACACCATAGAACAGCTGCAGCAGAGGGGATGCCCAGAGAATGAGATTGAGTTTCCAGTAAATGAAATCAAAAGGACGCAGGACAGTGCGTTCAGCAATAAGATACAGCTGACTCCCCAGGAGGTGCATCTGAAGCTGAGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.1=56.7)
C2:
PF0036213=Integrin_beta=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGTTGCTACTGACAAC
R:
CCTGGGGAGTCAGCTGTATCT
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]