RnoEX0045201 @ rn6
Exon Skipping
Gene
ENSRNOG00000001224 | Itgb2
Description
integrin subunit beta 2 [Source:RGD Symbol;Acc:1305581]
Coordinates
chr20:11796032-11800292:-
Coord C1 exon
chr20:11800072-11800292
Coord A exon
chr20:11799634-11799722
Coord C2 exon
chr20:11796032-11796212
Length
89 bp
Sequences
Splice sites
3' ss Seq
CAGCCTGCCTGTCTCTCCAGCCC
3' ss Score
7.54
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTACTTGACCACCTGAGCCAGCCCCCCCACATCCCTCCCTGAGGTAGCTGAGTGACATCTGTGCTGGCCCTCTCTGATCCTCGTACCCTGTGGCAGCAAGCCTGCAAGGAGGAACTCCTTGGGTGATCAGCCTGGAGTCATCTGGCCCTTCTCTCCACAGGACATGCTGGGCCCACACACACTGCTACTCATCCTAGCTGGACTACTCTTCCTGGGATCTG
Seq A exon
CCCTGTCCGAGGAATGCACCAAGTACAAAGTCAGCAACTGCCGGGACTGTATCCAGTCGGGGCCTGGCTGCTCGTGGTGCCAGAAGCTG
Seq C2 exon
AACTTCACCGGACCAGGGGAGCCTGACTCCTTGCGCTGTGACACGCGGGCACAGCTGCTCCTCAAGGGTTGCCCAGCCGATGATATAATGGACCCCAAGAGCTTTGCTGATCTCCACCCCCAATATCAGGTGCAACGGAGTCAACTGTCTCCACAAAAAGTGACCCTTAACTTGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001224-'3-5,'3-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.1=56.7)
C2:
PF0036213=Integrin_beta=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGACTACTCTTCCTGGG
R:
GTTGACTCCGTTGCACCTGAT
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]