GgaEX1030764 @ galGal4
Exon Skipping
Gene
ENSGALG00000007511 | ITGB2
Description
integrin beta-2 precursor [Source:RefSeq peptide;Acc:NP_990582]
Coordinates
chr7:7181363-7182167:-
Coord C1 exon
chr7:7182101-7182167
Coord A exon
chr7:7181792-7181880
Coord C2 exon
chr7:7181363-7181546
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCATCTTCTCCACATTTCAGCCT
3' ss Score
6.71
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GAAATGCCCCGTGACTGCTGCCTCTGGCTGCCAGCAATGACCTGGGTGCTGTTGCTACTGACAACAG
Seq A exon
CCTTTGCTGCAGAGTGTCCCAAGATCAAGGTGGGGACATGCAAGAACTGCATCCAGTCAGGCCCTGGCTGCGCCTGGTGCAAGAAGCTG
Seq C2 exon
AGTTTCACCAAAGCTGGTGAGCCAGACTCCAACCGCTGTGACACCATAGAACAGCTGCAGCAGAGGGGATGCCCAGAGAATGAGATTGAGTTTCCAGTAAATGAAATCAAAAGGACGCAGGACAGTGCGTTCAGCAATAAGATACAGCTGACTCCCCAGGAGGTGCATCTGAAGCTGAGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.1=56.7)
C2:
PF0036213=Integrin_beta=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGTTGCTACTGACAAC
R:
CCTGGGGAGTCAGCTGTATCT
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]