BtaEX6004398 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012837 | COL6A6
Description
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr1:153335683-153346631:-
Coord C1 exon
chr1:153346138-153346631
Coord A exon
chr1:153339636-153339732
Coord C2 exon
chr1:153335683-153336354
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTTGCTTCTTGCAGATT
3' ss Score
10.31
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAGCGCCTCAGTGCCCCGTGTACCCGATGGAGCTGGTGTTCGCGCTGGACCAGTCCCGGAGCGTCACAGAGCCCGAGTTTGCGCGGATGAAGGCGATGCTGTCCTCCCTGCTGAGCGGCCTCCGGGTCCGGGAGGACCACTGCCCCACAGGTGCGCGCGTGGCCGTGCTGGCCTACGACTCCCACGCCAGACTCCTCATCCGCTTCTCCGACACGTACAGGAAGGACAGACTCCTCCGAGAGATCGAGGCCCTCCCTTACGAGCGCTCCACGGCCAGCAGGGACATCGGCAAGGCCATGAGGTTTGTCTCCAGGCACGTCTTCAAGCGGATGCTCCCGGGGTCTCACGCCAGAAGAATCGCCACCTTCTTCAGCGGCGGCCCGTCTGTGGACCCCCAGACCGTCACCACCGCTGGCCTGGAGTTCAGCGCCCTGGACATCATCCCAGTGGTGATCGCCTTCAATCAGGTGCCTGCCGTCCGGCGATCGTTTGCG
Seq A exon
ATTGACGACACAGGCAGATTCCAAGTCATCATTATCCCATCCGGAGCTGACTCTGCACCAGCACTCGAGGGACTCCAGCGGTGTACTTTCTGCTACG
Seq C2 exon
ATGTATGCAAGCCGGACGCTTCTTGCGATCAAGCCAGACCACCCCCTGTGCCATCTTACGTGGACGCTGCTTTCCTTCTGGACGGCTCCCGGCATGTGGGAAGTGCAGAATTTGAAGACATACGAGGATTCTTGGGGGCGCTGTTAGATCACTTCGAAATCACCCCAGAGCCCGAGTCCTCTGTCACCGGAGACCGGGTGGCCCTATTAAGCCTCAGTCCCCCTCACTTCCTACCCAACACTCAGAGGAGCCCTGTTAGAAGCGAATTCAACCTGACCACCTACAAGAGCAAACGCCTCATGAAGAGACACGTGGAAGAATCCGTTCAGCAGCCAAATGGAGATGCTTTTATTGGTCACGCCCTCCAGTGGACTCTGGACAATGTCTTCTCAAGGACACCCAATCTGAGAAGGAATAAAGTCATTTTTGTGGTATCTGCTGGGGAAACCAGTCACTTGGACAGGGAAACCTTAAAGCAAGAATCCTTGAGGGCCAAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012837-'34-42,'34-40,36-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(90.1=93.3)
A:
PF0009223=VWA=PD(8.8=45.5)
C2:
PF0009223=VWA=WD(100=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATCCCAGTGGTGATCGC
R:
ATTCTGCACTTCCCACATGCC
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]