RnoEX0023504 @ rn6
Exon Skipping
Gene
ENSRNOG00000023007 | Col6a6
Description
collagen type VI alpha 6 chain [Source:RGD Symbol;Acc:1309172]
Coordinates
chr8:114363036-114373327:-
Coord C1 exon
chr8:114372834-114373327
Coord A exon
chr8:114366456-114366552
Coord C2 exon
chr8:114363036-114363704
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTCTGCTTCTTCCAGATT
3' ss Score
9.94
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAAAACCTGAGTGCCCAGTGCATCCAACTGAGTTGGTGTTTGTCCTGGACCAGTCCCGGGATGTCACAGAACAGGACTTTGAGCGGATGAAGGGGATGATGGCCTCCTTAGTTAGGGACATCAAAGTTAGGGATGCCAGCTGCCCCGTGGGTGCCCGCGTTGCCATCCTAGCCTACAACTCCCACACCAGGCACCTCATCCGCTTCTCGGATGCCTACAGGAAGGACCAGCTGCTCAGGGAAATTAAAGCTCTTCCTTACGAGAAATCCTCCGACAGCAGGGAGATTGGCAAAGCCATGAGGTTTATCTCCAGGAATGTCTTCAAGAGAACCCTCCCAGGGGCTCACGTGAGAAGAATCGCCACGTTCTTTAGCAGTGGCCAGTCAGCCGATGTCCAGTCCATTACCACAGCTGCCATGGAGTTCAGTGCCCTGGACATCATACCAGTGGTGATTGCATTCAGCAACGTGCCCTCGGTCAAGCGTGCCTTTTCG
Seq A exon
ATTGATGACACTGGTACATTCCAAGTCCTTGTGGTTCCCTCCAGGCCTGACCAAGTGCCAGCGTTAGAGAGACTCCAGCGGTGCACTTTCTGCTATG
Seq C2 exon
ACCTATGCAAGCCAGATGCTTCTTGTGACCAAGCCAAACCCCCCATTCAGTCCTACCTGGATGCTGCATTCCTGCTGGATAGCTCCTGGCATGTGGGAGGTGCAGAATTTGAAGACATGAGAGACCTCCTGGAGGCCCTGCTAGATCACTTTGAAATCGCTTCAGAGCCAGAGACGTCTGTCACTGGAGACAGGGTGGCCCTACTGAGTCATGCTCCCGTTGACTTCCTACCCAACACCCAGAGGAGTCCCGTTAGAACTGAGTTCAACCTAACCACCTATAGCAGTAAGCACCTCATGAAGAGACACGTGGAGCAAGCAGTCCAGCAGCTGAATGGAGATGCTTTCCTTGGTCATGCCCTCAGGTGGGCACTGGACAATGTCTTTCTAAACACGCCCAATCTGAGAAGGAACAAAGTCATATTTGTGATATCTGCTGGGGAAACCAGCCACCTGGATGCGGAAACCTTAAAGAAAGAGTCCCTGCGAGCCAAATGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023007_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(92.8=93.3)
A:
PF0009223=VWA=PD(6.0=30.3)
C2:
PF0009223=VWA=WD(100=80.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCACGTTCTTTAGCAGTG
R:
TGGTCACAAGAAGCATCTGGC
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]