GgaEX6019505 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:41592101-41594264:+
Coord C1 exon
chr2:41592101-41592594
Coord A exon
chr2:41593345-41593435
Coord C2 exon
chr2:41594110-41594264
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTTTAAAACCTAGATT
3' ss Score
6.77
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
ATACAGACATCTGTCCAGTTTATCCAACGGAGGTGGTGTTTGCCCTTGATATGTCTGAAGGTGTTACTCCAGCTGCATTTGAACGAATGAGAAACATTGTTATGTCACTGCTGAAGACCATTAAGATCAGTGAAAGCAATTGCCCAACAGGCGCCCGTGTTTCCATCGTTTCTTTCAATACCAACATACGCTATCTCATTCGTTTCTCAGAATTCCAAAAACACAACTTGCTTCTACAGGCAGTCCAGAGAATACCTCTAGAGAGATCTACTGGAAAACGTAGTATTGGGACAGCTATGAGATTTGTTGCAAGAAATGTCTTCAAACGGGTTCGTCAGGGCATCCTCACAAGAAAAGTTGCCATATTTTTTGCCAGTGGTCCATCTCAGGAGGATGTGGTCGAAAGCACAGCTGTACTTGAGTTGAGCGCCTGGGATATCACTCCAGTGGTTATTGCCTTCACTGAATTGCCAAATGTCAGACGTGCCTTCTCA
Seq A exon
ATTGATGATACTGGAAGATTTCAATTATTTGTTTGGGAAAGACAACAGGATGAAAATTTGGAGAACATCACAAATTGTACACTTTGCTTTG
Seq C2 exon
ATAAATGCAAGCCCAGTACCAACTGCAAAGTGCCCATTTCTCCACCTCTTCTGATGGATATGGATATTACTTACATCATGGACAGCTCTCGCAGCATCAGCAGTGAAGATTTTCAGAGAGCCAAGGACTTTGTGAGCAACATGATAGATCAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567-'39-42,'39-41,40-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(85.6=93.3)
A:
PF0009223=VWA=PD(13.3=77.4)
C2:
PF0009223=VWA=WD(100=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGCGCCTGGGATATCAC
R:
ATCTTCACTGCTGATGCTGCG
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]