MmuEX6068387 @ mm9
Exon Skipping
Gene
ENSMUSG00000043719 | Col6a6
Description
collagen, type VI, alpha 6 [Source:MGI Symbol;Acc:MGI:2444259]
Coordinates
chr9:105600991-105611914:-
Coord C1 exon
chr9:105611421-105611914
Coord A exon
chr9:105604528-105604624
Coord C2 exon
chr9:105600991-105601662
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCACTTCTGCCTTCTTCCAGATT
3' ss Score
11.4
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAAAACCTGAGTGCCCAGTGCATCCAACTGAGTTGGTGTTTGTCCTGGACCAGTCCCGGGATGTCACAGAGCAGGACTTTGAGCGAATGAAGGGGATGATGGTCTCCCTAGTTAGGGATGTCAAGGTTAGGGAGGCCAACTGCCCCGTGGGTGCCCGCGTTGCCATCCTAGCCTACAACTCCCACACCAGGCACCTCATCCGCTTCTCAGATGCCTACAGGAAGGACCAGCTGCTCACGGCGATTAAAGCTCTTCCTTATGAGAGATCCTCCGACAGCAGGGAGATTGGCAAAGCCATGAGGTTCATCTCCAGGAATGTCTTCAAGAGAACCCTTCCAGGGGCTCATGTGAGAAGAATCGCCACGTTCTTTAGCAGTGGTCCATCGGCCGACGCCCAGACCATTACCACAGCCGCCATGGAGTTCAGTGCCCTGGACATTGTACCTGTGGTGATTGCGTTCAGCAACGTGCCCTCGGTCAAGCGCGCCTTTTCA
Seq A exon
ATTGATGACACTGGCACATTCCAAGTCATTGTGGTTCCCTCCGGGTCTGATGAAGGGCCAGCGTTAGAGAGACTCCAGCGGTGCACTTTCTGCTATG
Seq C2 exon
ATCTATGCAAGCCGGATGCTTCGTGTGACCAAGCCAAACCACCCCCCATTCAGTCCTACCTGGACACTGCATTCCTACTGGATGGCTCTCGGCACGTGGGAAGTGCAGAGTTTGAAGACATGAGAGACTTTCTAGAGGCACTGCTAGATCACTTCGAAATCACTTCGGAGCCAGAGACATCTGTCACTGGAGACAGGGTGGCCCTGCTGAGCCATGCCCCCCTCGACTTCCTACCCAACACCCAGAGGAGTCCGGTTAGAACTGAGTTCAACCTAACCAGCTATAGCAGTAAGCGCCTCATGAAGAGACACGTGGATCAGGCAGTCCAGCAGCTGCATGGAGATGCTTTTCTTGGCCATGCCCTCGGGTGGGCACTGGACAACGTCTTTTTAAACACCCCCAATTTGAGACGAAACAAAGTCATATTTGTGATATCTGCTGGGGAAACCAGCCACCTGGATGCGGAAACCTTAAAGAAAGAGTCCCTACGAGCCAAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043719-'35-35,'35-34,36-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(92.2=93.3)
A:
PF0009223=VWA=PD(6.6=33.3)
C2:
PF0009223=VWA=WD(100=80.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGACATTGTACCTGTG
R:
AAACTCTGCACTTCCCACGTG
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: