DreEX0023484 @ danRer10
Exon Skipping
Gene
ENSDARG00000079752 | col6a6
Description
collagen, type VI, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-041111-303]
Coordinates
chr16:36753132-36755804:+
Coord C1 exon
chr16:36753132-36753625
Coord A exon
chr16:36754310-36754406
Coord C2 exon
chr16:36755139-36755804
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATATGTTGTACTGTATGCAGGCA
3' ss Score
5.27
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ACAACATAAAATGTCCGGCATACCCCACTGATCTTGTGATTGGCATGGACATGTCTGAAGATGTGACCCCTCAAGGCTTTGAGCGCATGCGTTCTGTGGTCCTCAGACTGCTGGACAACATGAAAATTGCAGAGAGTAGCTGCCCGACAGGGGCTCGAGTGGCTCTGGTGTCCTACAGCTCATTCACCAAATACCTGATCCGCTTTAACGACTACCACCGCAAGAAGCAGCTTATCGATGCCGTCAACAACATCGCCCTGGAACGCACTTCAAATCGCCGCAACATTGGCGCTGCCATGCGGTTTGTGGGCAGAAATGTTCTGAAGCGAGTGCGAAAAGGCATCCTGATGAGGAAGGTTGCCATTTTCCTCACTGCTGGAGAATCTCAAGATTCGATATCTCTCACCACTGCCATTCTAGAGTACAAAGCCCTGAATATTAAACTTGGGGTCATTGCTCTGAGGAATGTCCCTGCTATCAGGAGAGCTTTTGAG
Seq A exon
GCAGATGAGAGCCAGAGTTTTATCCTGACTGTTCTGGGTAGAGTGCAAGACCAGAATGCTACTCTTAGTAAGATCCAGAGTTGTGTTATTTGCTATG
Seq C2 exon
ATCCCTGCAGACCAGCTAGAGAATGTGAGGGCACCAACCTGCCATCTGCACCTCAGGAGCTGGACATGGACTTTGTGATGGTTGTGGACGGGTCCCGTAGCATCCTGGCTGACGAGTTCAAGGGTGTCAAGGAGGTGCTCGGCGGTGTGCTCGATCAAATTGTTGTGAGCAGTCAACCCACCAGGGCTGACAGACAGGCCAGAGTGGCTCTCTACCAGCAGACGTCTACCTATAGTGACCCCCAGCCTGCACACGAGATATTCAGCTTACGTGAGTTCTCTGATCGCAATCTAATGAAGACAAGCATCATCCAAAAACTAAAGCAAACCGGAGGATCTCATGAACTGGGTTCTACTTTGGAGTTTGCTTTCAAGAAGTGTTTCAACGCAGTTCCAGAAAGTCGCAAGAACAAGATGCTGCTGGCCATCATTGGGGAGGAGACAGCGTTACAGGAGAAAAAACGTCTGGACTCTTTCTCCAGGTTGGCGAAGTGTAGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079752-'35-33,'35-32,36-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(87.0=93.3)
A:
PF0009223=VWA=PD(12.4=66.7)
C2:
PF0009223=VWA=WD(100=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATGAGGAAGGTTGCCA
R:
CTCTAGCTGGTCTGCAGGGAT
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]