GgaEX6019505 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42172197-42174877:+
Coord C1 exon
chr2:42172197-42172690
Coord A exon
chr2:42173441-42173531
Coord C2 exon
chr2:42174206-42174877
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTTTAAAACCTAGATT
3' ss Score
6.77
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
ATACAGACATCTGTCCAGTTTATCCAACGGAGGTGGTGTTTGCCCTTGATATGTCTGAAGGTGTTACTCCAGCTGCATTTGAACGAATGAGAAACATTGTTATGTCACTGCTGAAGACCATTAAGATCAGTGAAAGCAATTGCCCAACAGGCGCCCGTGTTTCCATCGTTTCTTTCAATACCAACATACGCTATCTCATTCGTTTCTCAGAATTCCAAAAACACAACTTGCTTCTACAGGCAGTCCAGAGAATACCTCTAGAGAGATCTACTGGAAAACGTAGTATTGGGACAGCTATGAGATTTGTTGCAAGAAATGTCTTCAAACGGGTTCGTCAGGGCATCCTCACAAGAAAAGTTGCCATATTTTTTGCCAGTGGTCCATCTCAGGAGGATGTGGTCGAAAGCACAGCTGTACTTGAGTTGAGCGCCTGGGATATCACTCCAGTGGTTATTGCCTTCACTGAATTGCCAAATGTCAGACGTGCCTTCTCA
Seq A exon
ATTGATGATACTGGAAGATTTCAATTATTTGTTTGGGAAAGACAACAGGATGAAAATTTGGAGAACATCACAAATTGTACACTTTGCTTTG
Seq C2 exon
ATAAATGCAAGCCCAGTACCAACTGCAAAGTGCCCATTTCTCCACCTCTTCTGATGGATATGGATATTACTTACATCATGGACAGCTCTCGCAGCATCAGCAGTGAAGATTTTCAGAGAGCCAAGGACTTTGTGAGCAACATGATAGATCAGTTTGTCATTGCTGAACAGCCAAGTGAATCTTTAGGAGGCACCAGAGTGGCATTGGTACAGCAGGCTCCCAGAGGCTTCCTACCTGACAGAAACAAAATCCCTGTGGCCTTGGAATTTGATCTAGAAACATATAACAATAAAGATTTGATGAAGAAACATATCCAGGAGTCTGTTCACCAACTAGAAGGGCCATCAGCCATTGCTTCTGCATTACAGTGGACAGTTGAAAATGTATTTTTTAAAGCTCCCAGACAAAGAAAACACAGGGTCGTATTTGCAATAGTTGGAAGCAAAACAAGCACACAAGACAGAGAGAAGCTAAGAGAGATTTCACTTGGAGTCAAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567-'46-50,'46-49,47-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(86.0=93.3)
A:
PF0009223=VWA=PD(12.8=74.2)
C2:
PF0009223=VWA=WD(100=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGCGCCTGGGATATCAC
R:
ATCTTCACTGCTGATGCTGCG
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]