BtaEX6004933 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014088 | MBNL3
Description
muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:16122073-16141559:-
Coord C1 exon
chrX:16141395-16141559
Coord A exon
chrX:16123579-16123773
Coord C2 exon
chrX:16122073-16122309
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTAAACATACAGAAT
3' ss Score
6.13
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGCCGGTGTGCCAGAGAGAACTGCAAGTACCTTCACCCTCCTCCACATTTGAAGACGCAGCTGGAAATTAATGGACGGAACAATCTGATTCAACAAAAGAGTGCCGCCGCCATGTTCGCCCAGCACATGCAGTTTATGTTCCAAAATGCTCAGATGCCATCAGTT
Seq A exon
AATTCTTTTCCTGTGAATCCTGCAATTGCAGCTAATCCTGCCATGGCTTACAATCCTTACTTACCTCATCATCCTGGGATGGGCCTGGTCCCCGCCGAACTGGTACAAAACGCACCTGTTCTGATTTCTGGAAACCCACCTCTGCCACTGCCAGGGCCTGTTGGTCCAAAACCGATACGTTCAGATAAACTGGAG
Seq C2 exon
GTTTGCCGTGAATTTCAGCGAGGTAATTGTACCCGTGGTGAGAATGATTGCCGCTATGCTCACCCTACTGATGTGTCCATGATTGAGACAAGTGATAATACTGTGACCATCTGCATGGATTATATCAAAGGTCGATGCTCCCGGGAGAAATGCAAGTATTTTCATCCTCCTGCGCACTTGCAAGCCAAACTCAAAGCAGCTCATTACCAGATGAACCATTCAGCTGCCACTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014088-'7-2,'7-1,9-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.436 A=0.769 C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.6)
C2:
PF0064219=zf-CCCH=PD(81.5=27.8)
Main Skipping Isoform:
ENSBTAT00000018746fB4137
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCACATGCAGTTTATG
R:
TGAGCTGCTTTGAGTTTGGCT
Band lengths:
251-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]