Special

HsaEX6053380 @ hg19

Exon Skipping

Gene
Description
muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:20564]
Coordinates
chrX:131524875-131540420:-
Coord C1 exon
chrX:131540256-131540420
Coord A exon
chrX:131526171-131526362
Coord C2 exon
chrX:131524875-131525111
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTTAAACATACAGGGT
3' ss Score
7.38
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGTCGGTGTACCCGAGAGAACTGCAAGTACCTTCACCCTCCTCCACACTTAAAAACGCAGCTGGAGATTAATGGGCGGAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCAGATGCAGCTTATGCTCCAAAACGCTCAAATGTCATCACTT
Seq A exon
GGTTCTTTTCCTATGACTCCATCAATTCCAGCTAATCCTCCCATGGCTTTCAATCCTTACATACCACATCCTGGGATGGGCCTCGTTCCTGCAGAACTTGTACCAAATACACCTGTTCTGATTCCTGGAAACCCACCTCTTGCAATGCCAGGAGCTGTTGGCCCAAAACTGATGCGTTCAGATAAACTGGAG
Seq C2 exon
GTTTGCCGAGAATTTCAGCGTGGAAATTGTACCCGTGGGGAGAATGATTGCCGCTATGCTCACCCTACTGATGCTTCCATGATTGAAGCGAGTGATAATACTGTGACAATCTGCATGGATTACATCAAAGGTCGATGCTCGCGGGAGAAATGCAAGTACTTTCATCCTCCTGCACACTTGCAAGCCAGACTCAAGGCAGCTCATCATCAGATGAACCATTCAGCTGCCTCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076770-'6-11,'6-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (disopred):
  C1=0.389 A=0.958 C2=0.330
Domain overlap (PFAM):

C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.7)
C2:
PF0064219=zf-CCCH=PD(81.5=27.8)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGAGATTAATGGGCGG
R:
GCGAGCATCGACCTTTGATGT
Band lengths:
250-442
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains