GgaEX1035316 @ galGal3
Exon Skipping
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3509667-3520067:-
Coord C1 exon
chr4:3519903-3520067
Coord A exon
chr4:3511324-3511524
Coord C2 exon
chr4:3509667-3509903
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTTTCTGTGCACAGACG
3' ss Score
9.85
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGCCGGTGTACCCGAGAGAACTGCAAATATCTCCACCCTCCCCCGCACTTAAAAACACAACTTGAAATAAATGGACGCAACAACCTGATCCAGCAAAAGACGGCCGCAGCCATGTTTGCTCAGCAAATGCAGTTCATGCTACCAGGCACGCAGCTACAGCCAATC
Seq A exon
ACGACATTTCCTGTGACTCCATCGCTTGCAACAAGCCCCACAATGGCTTTTAGTCCCTACCTGAGTCACGTTTCTCCTGGGATGGGCTTGGTTCCTGCAGAGCTTTTACCAAATACTCCTGTCCTGGTTTCTGGAAATCCAACTGTTACGGTACCAGGAAGCTCTGCTGGGCAGAAACTGATGCGTACGGATAAACTGGAG
Seq C2 exon
GTTTGTCGAGAGTTTCAGCGTGGAAATTGCACACGTGGTGAGAACGACTGCCGCTATGCTCACCCGATAGATATTGCGATGATAGACACCAATGAAAATACTGTTACAGTTTGCATGGATTACATCAAAGGTCGATGCTCTAGGGAGAAATGCAAGTACTTTCATCCCCCTGCACACCTGCAAGCCAAAATCAAGGCAGCTCAACATCAGGTGAACCAGACAGCTGCAGCTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.699 A=0.888 C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
PF0064219=zf-CCCH=PD(81.5=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACGCAACAACCTGATCC
R:
GCCTTGATTTTGGCTTGCAGG
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]