MmuEX6044332 @ mm9
Exon Skipping
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:48483282-48492545:-
Coord C1 exon
chrX:48492381-48492545
Coord A exon
chrX:48484606-48484797
Coord C2 exon
chrX:48483282-48483518
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTTCTGAACACAGGCG
3' ss Score
7.38
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGTCGGTGCACTCGTGAGAACTGCAAGTACCTCCACCCTCCACCGCACTTAAAGTCGCAGCTAGAAGTTAATGGGAGAAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCACATGCAACTCATGCTGCAGAACGCTCAGATGTCATCTCTT
Seq A exon
GCGTCTTTTCCTATGAATCCATCACTTGCAGCTAATCCTGCCATGGCTTTCAATCCTTACATGACTCATCCTGGCATGGGCCTGGTTCCTGCTGAGCTTTTACCAAATGGTCCGGTTCTGATTTCTGGAAACCCTCCTCTTGCACTGCCAGGAGTTCCTGGTCCAAAGCCAATTCGTACAGATAGACTGGAG
Seq C2 exon
GTTTGCCGTGAATTTCAGCGTGGAAATTGTACCCGTGGGGAGAGCGAGTGCCGCTATGCTCACCCTACGGATGTTTCCATGATTGAAGTCACTGATAATTCTGTGACAATCTGCATGGATTACATTAAAGGCCGATGCTCCCGGGAGAAATGCAAGTACTTTCATCCTCCTCCCCACTTGCAGGCCAAACTCAGGGCAGCTCATCACCAGATGAACCATTCTGCTGCCAATGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.736 A=0.835 C2=0.291
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.7)
C2:
PF0064219=zf-CCCH=PD(81.5=27.8),PF0064219=zf-CCCH=WD(100=30.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCATGCTGCAGAACGCTC
R:
GTGATGAGCTGCCCTGAGTTT
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: