DreEX6058291 @ danRer10
Exon Skipping
Gene
ENSDARG00000016085 | mbnl3
Description
muscleblind-like splicing regulator 3 [Source:ZFIN;Acc:ZDB-GENE-081002-3]
Coordinates
chr14:30683568-30686690:-
Coord C1 exon
chr14:30686526-30686690
Coord A exon
chr14:30686221-30686421
Coord C2 exon
chr14:30683568-30683801
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTCTCTTATCCAGACC
3' ss Score
9.3
5' ss Seq
GAGGTGTTA
5' ss Score
-1
Exon sequences
Seq C1 exon
GGACGCTGTACACGTGATAACTGTAAGTACCTGCATCCTCCGCCTCATCTCAAGACCCAGCTGGAGATAAACGGCAGGAACAACCTGATCCAGCAGAAGACCGCAGCCGCCATGCTGGCCCAGCAGATGCAGTTCATGCTGCCTGGAGCTCAGCTGCAGCCCATA
Seq A exon
ACCTCTTTTCCAGTAACGCCTTCGTTGGCCAACAGTCCGAGCATGGCTTTCAGCCCGTACCTGAGCCACGTGAGCCCGGGCATCAGTCTCATGCCCGAGCTTCTGCCCAGCGCCCCCGTGCTGGTCCCGGGGAGCCCCACCGGCATCACCATGGGCAACGGAAATTCAACACAGAAACATGTTCGCACAGACAAGCTTGAG
Seq C2 exon
GTTTGTCGAGAGTTTCAGCGGGGAAACTGCACTCGCGGGGAGAACGACTGCCGCTATGCCCATCCAATGGAAGCTGCAATGGTAGACGGCAGCGAGAACTCCGTCATTGTTTGCATGGATTACATCAAGGGCCGCTGCACCCGTGACAAATGCAAGTACTTTCACCCTCCGGCTCACTTACAGGCCCGGATAAAGGCGGCGCAGCACCAAGCCAGTCAGAATGCAGCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016085-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.447 A=0.416 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
PF0064219=zf-CCCH=PD(81.5=28.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGAGATAAACGGCAGG
R:
GCCTTTATCCGGGCCTGTAAG
Band lengths:
305-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]